Usage:
illumina-dump [options] [ -A ]
illumina-dump [options]
-A, --accession Accession.
Options:
-D, --table-path Path to accession data.
-O, --outdir Output directory. Default: '.'
-N, --minSpotId Minimum spot id to output.
-X, --maxSpotId Maximum spot id to output.
-G, --spot-group Split into files by SPOT_GROUP (member name).
-GL, --spot-group-list [name,[name...]] Filter by SPOT_GROUP (member).
-R, --read-filter [pass|reject|criteria|redacted] Split into files by READ_FILTER value, optional filter by a value.
-T, --group-in-dirs Split into subdirectories instead of files.
-K, --keep-empty-files Do not delete empty files.
-L, --log-level Logging level: fatal|sys|int|err|warn|info.
-H, --help Prints this message.
Format options:
-r, --read Output READ: "seq". Default: on
-q, --qual1 Output QUALITY, whole spot (1) or split by reads (2): "qcal". Default: 1
-p, --qual4 Output full QUALITY: "prb". Default: off
-i, --intensity Output INTENSITY, if present: "int". Default: off
-n, --noise Output NOISE, if present: "nse". Default: off
-s, --signal Output SIGNAL, if present: "sig2". Default:off
-qseq Output QSEQ format: whole spot (1) or split by reads (2): "qseq". Default: off
Version: 2.0.4